Hepatitis Monthly

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Hepatitis E Virus Circulation in Italy: Phylogenetic and Evolutionary Analysis

Carla Montesano 1 , Marta Giovanetti 1 , Marco Ciotti 2 , Eleonora Cella 3 , 4 , Alessandra Lo Presti 3 , Alba Grifoni 5 , Gianguglielmo Zehender 6 , Silvia Angeletti 7 and Massimo Ciccozzi 3 , 7 , *
Authors Information
1 Department of Biology, University of Rome Tor Vergata, Rome, Italy
2 Laboratory of Molecular Virology, Polyclinic Tor Vergata Foundation, Rome, Italy
3 Molecular Epidemiology and Microbial Evolution (FEMEM)/Epidemiology Unit, Department of Infectious, Parasitic and Immune-Mediated Diseases, Institute Superiore di Sanita, Rome, Italy
4 Department of Public Health and Infectious Diseases, Sapienza University of Rome, Rome, Italy
5 ProxAgen Ltd, Sofia, Bulgaria
6 Laboratory of Infectious Diseases and Tropical Medicine, University of Milan, Milan, Italy
7 Clinical Pathology and Microbiology Laboratory, University Hospital Campus Bio-Medico, Rome, Italy
Article information
  • Hepatitis Monthly: 16 (3); e58760
  • Published Online: March 12, 2016
  • Article Type: Research Article
  • Received: July 31, 2015
  • Accepted: January 9, 2016
  • DOI: 10.5812/hepatmon.31951

To Cite: Montesano C, Giovanetti M, Ciotti M, Cella E, Lo Presti A, et al. Hepatitis E Virus Circulation in Italy: Phylogenetic and Evolutionary Analysis, Hepat Mon. Online ahead of Print ; 16(3):e58760. doi: 10.5812/hepatmon.31951.

Abstract
Copyright © 2016, Kowsar Corp. This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (http://creativecommons.org/licenses/by-nc/4.0/) which permits copy and redistribute the material just in noncommercial usages, provided the original work is properly cited.
1. Background
2. Objectives
3. Materials and Methods
4. Results
5. Discussion
Acknowledgements
Footnotes
References
  • 1. Labrique AB, Zaman K, Hossain Z, Saha P, Yunus M, Hossain A, et al. An exploratory case control study of risk factors for hepatitis E in rural Bangladesh. PLoS One. 2013; 8(5)[DOI][PubMed]
  • 2. Panda SK, Thakral D, Rehman S. Hepatitis E virus. Rev Med Virol. 2007; 17(3): 151-80[DOI][PubMed]
  • 3. Kamar N, Bendall R, Legrand-Abravanel F, Xia NS, Ijaz S, Izopet J, et al. Hepatitis E. The Lancet. 2012; 379(9835): 2477-88[DOI]
  • 4. Tam AW, Smith MM, Guerra ME, Huang CC, Bradley DW, Fry KE, et al. Hepatitis E virus (HEV): Molecular cloning and sequencing of the full-length viral genome. Virology. 1991; 185(1): 120-31[DOI]
  • 5. Lu L, Li C, Hagedorn CH. Phylogenetic analysis of global hepatitis E virus sequences: genetic diversity, subtypes and zoonosis. Rev Med Virol. 2006; 16(1): 5-36[DOI][PubMed]
  • 6. Johne R, Plenge-Bonig A, Hess M, Ulrich RG, Reetz J, Schielke A. Detection of a novel hepatitis E-like virus in faeces of wild rats using a nested broad-spectrum RT-PCR. J Gen Virol. 2010; 91: 750-8[DOI][PubMed]
  • 7. Takahashi M, Nishizawa T, Sato H, Sato Y, Jirintai S, Nagashima S, et al. Analysis of the full-length genome of a hepatitis E virus isolate obtained from a wild boar in Japan that is classifiable into a novel genotype. J Gen Virol. 2011; 92: 902-8[DOI][PubMed]
  • 8. Zhao C, Ma Z, Harrison TJ, Feng R, Zhang C, Qiao Z, et al. A novel genotype of hepatitis E virus prevalent among farmed rabbits in China. J Med Virol. 2009; 81(8): 1371-9[DOI][PubMed]
  • 9. Buisson Y, Grandadam M, Nicand E, Cheval P, van Cuyck-Gandre H, Innis B, et al. Identification of a novel hepatitis E virus in Nigeria. J Gen Virol. 2000; 81: 903-9[DOI][PubMed]
  • 10. van Cuyck-Gandre H, Zhang HY, Tsarev SA, Clements NJ, Cohen SJ, Caudill JD, et al. Characterization of hepatitis E virus (HEV) from Algeria and Chad by partial genome sequence. J Med Virol. 1997; 53(4): 340-7[DOI]
  • 11. Tam AW, White R, Reed E, Short M, Zhang Y, Fuerst TR, et al. In vitro propagation and production of hepatitis E virus from in vivo-infected primary macaque hepatocytes. Virology. 1996; 215(1): 1-9[DOI][PubMed]
  • 12. Garbuglia AR, Scognamiglio P, Petrosillo N, Mastroianni CM, Sordillo P, Gentile D, et al. Hepatitis E virus genotype 4 outbreak, Italy, 2011. Emerg Infect Dis. 2013; 19(1): 110-4[DOI][PubMed]
  • 13. Giordani MT, Fabris P, Brunetti E, Goblirsch S, Romano L. Hepatitis E and lymphocytic leukemia in Man, Italy. Emerg Infect Dis. 2013; 19(12): 2054-6[DOI][PubMed]
  • 14. Caruso C, Modesto P, Bertolini S, Peletto S, Acutis PL, Dondo A, et al. Serological and virological survey of hepatitis E virus in wild boar populations in northwestern Italy: detection of HEV subtypes 3e and 3f. Arch Virol. 2015; 160(1): 153-60[DOI][PubMed]
  • 15. Colson P, Borentain P, Queyriaux B, Kaba M, Moal V, Gallian P, et al. Pig liver sausage as a source of hepatitis E virus transmission to humans. J Infect Dis. 2010; 202(6): 825-34[DOI][PubMed]
  • 16. Hoofnagle JH, Nelson KE, Purcell RH. Hepatitis E. N Engl J Med. 2012; 367(13): 1237-44[DOI][PubMed]
  • 17. Wedemeyer H, Pischke S, Manns MP. Pathogenesis and treatment of hepatitis e virus infection. Gastroenterology. 2012; 142(6): 1388-97
  • 18. Martinelli N, Pavoni E, Filogari D, Ferrari N, Chiari M, Canelli E, et al. Hepatitis E virus in wild boar in the central northern part of Italy. Transbound Emerg Dis. 2015; 62(2): 217-22[DOI][PubMed]
  • 19. Romano L, Paladini S, Tagliacarne C, Canuti M, Bianchi S, Zanetti AR. Hepatitis E in Italy: a long-term prospective study. J Hepatol. 2011; 54(1): 34-40[DOI][PubMed]
  • 20. Martinelli N, Luppi A, Cordioli P, Lombardi G, Lavazza A. Prevalence of hepatitis E virus antibodies in pigs in Northern Italy. Infect Ecol Epidemiol. 2011; 1: 1-3[DOI]
  • 21. Martelli F, Caprioli A, Zengarini M, Marata A, Fiegna C, Di Bartolo I, et al. Detection of hepatitis E virus (HEV) in a demographic managed wild boar (Sus scrofa scrofa) population in Italy. Vet Microbiol. 2008; 126(1-3): 74-81[DOI][PubMed]
  • 22. Lo Presti A, Ciccozzi M, Cella E, Lai A, Simonetti FR, Galli M, et al. Origin, evolution, and phylogeography of recent epidemic CHIKV strains. Infect Genet Evol. 2012; 12(2): 392-8[DOI][PubMed]
  • 23. Ciccozzi M, Lo Presti A, Cella E, Giovanetti M, Lai A, El-Sawaf G, et al. Phylogeny of Dengue and Chikungunya viruses in Al Hudayda governorate, Yemen. Infect Genet Evol. 2014; 27: 395-401[DOI][PubMed]
  • 24. Lo Presti A, Ciccozzi M, Cella E, Giovanetti M, Zehender G, Valenti D, et al. Migration patterns of HIV-1 subtype B virus in Northern Italy. New Microbiol. 2013; 36(1): 75-9[PubMed]
  • 25. Posada D, Buckley TR. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst Biol. 2004; 53(5): 793-808[DOI][PubMed]
  • 26. Villano U, Lo Presti A, Equestre M, Cella E, Pisani G, Giovanetti M, et al. Molecular epidemiology and phylogenetic analysis of Hepatitis B virus in a group of migrants in Italy. BMC Infect Dis. 2015; 15: 531[DOI]
  • 27. Yang Z, Nielsen R, Goldman N, Pedersen AM. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics. 2000; 155(1): 431-49[PubMed]
  • 28. Yang Z, Wong WS, Nielsen R. Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol. 2005; 22(4): 1107-18[DOI][PubMed]
  • 29. Anisimova M, Bielawski JP, Yang Z. Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol Biol Evol. 2001; 18(8): 1585-92[PubMed]
  • 30. Anisimova M, Bielawski JP, Yang Z. Accuracy and power of bayes prediction of amino acid sites under positive selection. Mol Biol Evol. 2002; 19(6): 950-8[PubMed]
  • 31. Pond SL, Frost SD, Muse SV. HyPhy: hypothesis testing using phylogenies. Bioinformatics. 2005; 21(5): 676-9[DOI][PubMed]
  • 32. Kosakovsky Pond SL, Frost SD. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol. 2005; 22(5): 1208-22[DOI][PubMed]
  • 33. Perez-Gracia MT, Suay B, Mateos-Lindemann ML. Hepatitis E: an emerging disease. Infect Genet Evol. 2014; 22: 40-59[DOI][PubMed]
  • 34. Zehender G, Ebranati E, Lai A, Luzzago C, Paladini S, Tagliacarne C, et al. Phylogeography and phylodynamics of European genotype 3 hepatitis E virus. Infect Genet Evol. 2014; 25: 138-43[PubMed]
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